STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca024456Uncharacterized protein. (242 aa)    
Predicted Functional Partners:
MA16_Dca010610
Uncharacterized protein.
    
   0.907
RPL21M
50S ribosomal protein L21, mitochondrial.
   
   0.891
RPL19
50S ribosomal protein L19, chloroplastic.
    
   0.889
MA16_Dca012140
Ribosomal_L30 domain-containing protein.
    
   0.889
rpl14
50S ribosomal protein L14, chloroplastic; Belongs to the universal ribosomal protein uL14 family.
    
   0.889
RPL15
50S ribosomal protein L15, chloroplastic.
    
   0.889
MA16_Dca018994
Uncharacterized protein.
    
   0.889
rpl20
50S ribosomal protein L20, chloroplastic.
    
   0.889
RPL4
50S ribosomal protein L4, chloroplastic.
    
   0.889
MA16_Dca024188
L51_S25_CI-B8 domain-containing protein.
    
   0.889
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.