STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca024391RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (451 aa)    
Predicted Functional Partners:
TFB1-1
Putative RNA polymerase II transcription factor B subunit 1-1.
    
 0.997
MA16_Dca020139
Uncharacterized protein.
    
 0.997
MA16_Dca003300
Uncharacterized protein.
   
 0.997
MA16_Dca024809
General transcription factor IIH subunit.
   
 0.997
UVH6
DNA repair helicase UVH6.
    
 0.996
MA16_Dca013528
HTH TFE/IIEalpha-type domain-containing protein.
   
 0.995
RAP74
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
    
 0.993
CYCH1-1
Cyclin-H1-1; Belongs to the cyclin family.
    
 0.993
MA16_Dca014514
Transcription initiation factor TFIIF subunit beta.
    
 0.991
MA16_Dca024610
Pentatricopeptide repeat-containing protein.
    
 0.991
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.