STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca005788Nucleolin 2. (730 aa)    
Predicted Functional Partners:
MA16_Dca006406
G-patch domain-containing protein.
   
 
 0.589
GRP10-2
Glycine-rich RNA-binding protein 10.
  
 
 0.549
NOP5-2-2
Putative nucleolar protein 5-2.
   
 
 0.535
NOP5-2
Putative nucleolar protein 5-2.
   
 
 0.527
NOP5-2-3
Putative nucleolar protein 5-2.
   
 
 0.527
MED36B
Putative mediator of RNA polymerase II transcription subunit 36b.
   
 
 0.524
MED36B-2
Putative mediator of RNA polymerase II transcription subunit 36b.
   
 
 0.524
MA16_Dca002736
RRM domain-containing protein.
   
   0.514
MA16_Dca004666
Sas10 domain-containing protein.
   
  
 0.458
MA16_Dca007198
U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.
   
  
 0.457
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.