STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RUB3-3Ubiquitin-like protein-NEDD8-like protein RUB3. (542 aa)    
Predicted Functional Partners:
MA16_Dca016087
ZZ-type domain-containing protein.
   
 0.959
MA16_Dca010420
Uncharacterized protein.
   
 0.959
MBP1
26S proteasome non-ATPase regulatory subunit 4.
   
 0.933
MA16_Dca025349
PCI domain-containing protein.
   
 0.885
PUB1
Putative ubiquitin conjugation factor E4.
    
 0.876
PRT1
E3 ubiquitin-protein ligase PRT1.
   
 0.855
PRT1-3
E3 ubiquitin-protein ligase PRT1.
   
 0.855
PRT1-4
E3 ubiquitin-protein ligase PRT1.
   
 0.855
UPL4
E3 ubiquitin-protein ligase UPL4.
   
 0.849
MA16_Dca004547
RPN13_C domain-containing protein.
   
 
 0.849
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.