STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca004066Uncharacterized protein. (543 aa)    
Predicted Functional Partners:
MA16_Dca020654
Zinc finger CCCH domain-containing protein 42.
   
 0.996
DDL-2
FHA domain-containing protein DDL.
   
 0.995
CDC5
Cell division cycle 5-like protein.
    
 
 0.975
PUB72
U-box domain-containing protein 72.
    
 
 0.970
MA16_Dca012546
MI domain-containing protein.
   
 
 0.969
MA16_Dca002566
PSP domain-containing protein.
    
 
 0.968
MA16_Dca025610
Matrin-type domain-containing protein.
    
 
 0.967
MBB1-3
PsbB mRNA maturation factor Mbb1, chloroplastic.
   
 
 0.962
MA16_Dca023288
MPN domain-containing protein.
    
 
 0.960
MA16_Dca013773
SKIP_SNW domain-containing protein.
    
 
 0.959
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.