STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAF1-11-7Putative CCR4-associated factor 1 like 11. (257 aa)    
Predicted Functional Partners:
MA16_Dca013209
Uncharacterized protein.
   
 0.842
VIP2-2
Putative NOT transcription complex subunit VIP2.
    
 0.827
MA16_Dca012133
CCR4-NOT transcription complex subunit 4.
    
 0.756
MA16_Dca010235
CCR4-NOT transcription complex subunit 4.
    
 0.756
MA16_Dca013338
CCR4-NOT transcription complex subunit 4.
    
 0.756
VIP2
Putative NOT transcription complex subunit VIP2.
   
 0.749
VIP2-3
Putative NOT transcription complex subunit VIP2.
   
 0.749
VIP2-4
Putative NOT transcription complex subunit VIP2.
   
 0.749
MA16_Dca011767
TPR_REGION domain-containing protein.
    
 0.737
MA16_Dca025198
Uncharacterized protein.
    
 0.734
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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