STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amyAGlycosidase; PFAM: Cyclomaltodextrinase, N-terminal; Alpha amylase, catalytic domain; Cyclo-malto-dextrinase C-terminal domain; Belongs to the glycosyl hydrolase 13 family. (616 aa)    
Predicted Functional Partners:
pulA
Pullulanase, type I; PFAM: Alpha amylase, catalytic domain; TIGRFAM: pullulanase, type I; Belongs to the glycosyl hydrolase 13 family.
  
 0.981
susB
PFAM: Glycoside hydrolase 97.
 
  
 0.899
malQ
4-alpha-glucanotransferase; PFAM: Starch binding domain; 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase.
 
  
 0.778
AGB28448.1
RagB/SusD family protein; PFAM: SusD family.
 
  
 0.775
AGB28444.1
Na+/melibiose symporter-like transporter; PFAM: Major Facilitator Superfamily.
 
  
 0.728
susC
TonB-linked outer membrane protein, SusC/RagA family; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family.
 
     0.724
AGB28450.1
Hypothetical protein.
 
  
 0.712
AGB28446.1
PFAM: Bacterial regulatory proteins, lacI family; family.
 
  
 0.566
glgB
1,4-alpha-glucan branching enzyme; PFAM: Alpha amylase, C-terminal all-beta domain; Alpha amylase, catalytic domain; Carbohydrate-binding module 48 (Isoamylase N-terminal domain).
 
  
 0.504
AGB27476.1
RagB/SusD family protein; PFAM: SusD family.
  
     0.490
Your Current Organism:
Prevotella dentalis
NCBI taxonomy Id: 908937
Other names: P. dentalis DSM 3688, Prevotella dentalis ATCC 49559, Prevotella dentalis DSM 3688, Prevotella dentalis JCM 13448, Prevotella dentalis str. DSM 3688, Prevotella dentalis strain DSM 3688
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