STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UO65_1391Protein of unknown function DUF422. (259 aa)    
Predicted Functional Partners:
UO65_1390
Glycosyl transferase, family 2.
 
   
 0.958
UO65_2872
Phytoene dehydrogenase.
 
  
 0.830
UO65_1675
Monooxygenase, FAD-binding.
 
  
 0.745
UO65_1389
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.
  
    0.712
UO65_1392
phi-Carotenoid synthase.
     
 0.585
UO65_4045
Phytoene dehydrogenase.
 
  
 0.534
UO65_0021
Lycopene beta cyclase.
 
  
 0.533
UO65_4906
Transcriptional regulator, MarR family.
  
     0.532
UO65_6502
Phytoene dehydrogenase.
 
  
 0.525
UO65_1737
Phytoene dehydrogenase.
 
  
 0.522
Your Current Organism:
Actinokineospora spheciospongiae
NCBI taxonomy Id: 909613
Other names: A. spheciospongiae, Actinokineospora sp. EG49, Actinokineospora spheciospongiae Kampfer et al. 2015 emend. Nouioui et al. 2018, CCM 8480, DSM 45935, LMG 27700, LMG:27700, strain EG49
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