STRINGSTRING
GEAM_0333 protein (Ewingella americana) - STRING interaction network
"GEAM_0333" - RNA 2',3'-cyclic phosphodiesterase in Ewingella americana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GEAM_0333RNA 2’,3’-cyclic phosphodiesterase; Hydrolyzes RNA 2’,3’-cyclic phosphodiester to an RNA 2’- phosphomonoester (181 aa)    
Predicted Functional Partners:
sfsA
Sugar fermentation stimulation protein homolog; Protein involved in maltose metabolic process; Belongs to the SfsA family (239 aa)
   
   
  0.882
hrpB
Protein involved in ATP-dependent helicase activity, ATP binding, nucleic acid binding, helicase activity and nucleobase-containing compound metabolic process (813 aa)
              0.637
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P); Belongs to the GHMP kinase family. GalK subfamily (383 aa)
   
 
    0.622
gluQ
Glutamyl-Q tRNA(Asp) synthetase; Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5- dihydroxy-2-cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon (304 aa)
         
  0.588
dksA
RNA polymerase-binding transcription factor DksA; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression (120 aa)
              0.556
GEAM_0295
AmpE family protein; Protein involved in biological_process (284 aa)
   
        0.554
GEAM_0121
YqiC family protein; Protein involved in biological_process (128 aa)
   
          0.535
GEAM_3850
DcrB family protein; Protein involved in biological_process (188 aa)
   
          0.520
GEAM_3428
Putative hydrolase; FIG001957; Protein involved in hydrolase activity and metabolic process (229 aa)
   
          0.515
GEAM_2222
annotation not available (82 aa)
   
          0.512
Your Current Organism:
Ewingella americana
NCBI taxonomy Id: 910964
Other names: E. americana ATCC 33852, Ewingella americana, Ewingella americana ATCC 33852, Ewingella americana ATCC33852, Ewingella americana str. ATCC 33852, Ewingella americana strain ATCC 33852
Server load: low (12%) [HD]