STRINGSTRING
crl protein (Ewingella americana) - STRING interaction network
"crl" - Sigma factor-binding protein Crl in Ewingella americana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
Coexpression
Experiments
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[Homology]
Score
crlSigma factor-binding protein Crl; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32 (121 aa)    
Predicted Functional Partners:
GEAM_0543
UPF0255 protein GEAM_0543; COG1073; Belongs to the UPF0255 family (415 aa)
 
          0.889
GEAM_4008
Uncharacterized protein; FIG00614015 (68 aa)
   
          0.679
GEAM_2926
annotation not available (129 aa)
   
          0.646
GEAM_3830
Protein involved in adenylate cyclase activity and cAMP biosynthetic process; Belongs to the adenylyl cyclase class-1 family (852 aa)
   
          0.613
bamC
Outer membrane protein assembly factor BamC; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane (356 aa)
   
          0.603
GEAM_3789
Putative inner membrane protein; Protein involved in biological_process (119 aa)
   
          0.597
GEAM_0903
Protein involved in porin activity and transport (366 aa)
   
          0.579
viaA
Protein involved in protein binding (489 aa)
   
          0.568
proB
Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate (367 aa)
              0.562
GEAM_1949
annotation not available (83 aa)
   
          0.561
Your Current Organism:
Ewingella americana
NCBI taxonomy Id: 910964
Other names: E. americana ATCC 33852, Ewingella americana, Ewingella americana ATCC 33852, Ewingella americana ATCC33852, Ewingella americana str. ATCC 33852, Ewingella americana strain ATCC 33852
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