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rnd protein (Ewingella americana) - STRING interaction network
"rnd" - Ribonuclease D in Ewingella americana
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
rndRibonuclease D; Exonuclease involved in the 3’ processing of various precursor tRNAs. Initiates hydrolysis at the 3’-terminus of an RNA molecule and releases 5’-mononucleotides; Belongs to the RNase D family (373 aa)    
Predicted Functional Partners:
rnr
Ribonuclease R; 3’-5’ exoribonuclease that releases 5’-nucleoside monophosphates and is involved in maturation of structured RNAs; Belongs to the RNR ribonuclease family. RNase R subfamily (847 aa)
     
  0.905
rnt
Ribonuclease T; Trims short 3’ overhangs of a variety of RNA species, leaving a one or two nucleotide 3’ overhang. Responsible for the end-turnover of tRNA- specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis (237 aa)
   
  0.875
GEAM_1793
Long-chain-fatty-acid--CoA ligase; Protein involved in catalytic activity and metabolic process (565 aa)
 
        0.874
rph
Ribonuclease PH; Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates (238 aa)
   
  0.854
rne
Ribonuclease E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs; Belongs to the RNase E/G family. RNase E subfamily (1105 aa)
     
 
  0.790
GEAM_0042
Cytoplasmic axial filament protein/ribonuclease G; Protein involved in RNA binding, ribonuclease activity, RNA catabolic process and RNA processing (489 aa)
         
  0.786
GEAM_0131
annotation not available (128 aa)
       
    0.775
ribE
Protein involved in riboflavin synthase activity, oxidoreductase activity, riboflavin biosynthetic process and oxidation-reduction process (218 aa)
 
            0.771
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3’- to 5’-direction (706 aa)
     
 
  0.770
rnb
Exoribonuclease 2; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3’ to 5’ direction (647 aa)
     
 
  0.769
Your Current Organism:
Ewingella americana
NCBI taxonomy Id: 910964
Other names: E. americana ATCC 33852, Ewingella americana, Ewingella americana ATCC 33852, Ewingella americana ATCC33852, Ewingella americana str. ATCC 33852, Ewingella americana strain ATCC 33852
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