STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSE_1860Putative proteinm; COG3520. (329 aa)    
Predicted Functional Partners:
PSE_2853
Hypothetical protein; COG3517.
 
  
 0.969
PSE_1859
Type VI secretion system; COG3519.
 
  
 0.967
PSE_1858
Type VI secretion system, lysozyme-related protein; COG3518.
 
  
 0.962
fha
FHA domain protein.
 
  
 0.952
impA
ImpA domain protein.
 
  
 0.944
impA-2
ImpA domain protein.
 
  
 0.940
evpB
Type VI secretion protein EvpB; COG3517.
 
  
 0.937
PSE_1862
Hypothetical protein; COG3521.
 
  
 0.929
PSE_1856
Hypothetical protein; COG3516.
 
  
 0.925
vgr
Type VI secretion system Vgr family protein.
 
  
 0.920
Your Current Organism:
Pseudovibrio sp. FOBEG1
NCBI taxonomy Id: 911045
Other names: P. sp. FO-BEG1, Pseudovibrio sp. FO-BEG1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.