STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSE_2853Hypothetical protein; COG3517. (665 aa)    
Predicted Functional Partners:
dotU-2
Type IV / VI secretion system, DotU/OmpA/MotB; COG3455.
 
  
 0.999
sciM
SciM protein.
 
 
 0.998
sciE
Virulence protein, SciE type.
 
   0.994
PSE_2851
Rhs element Vgr protein.
 
  
 0.988
hcp1
Type VI secretion system effector, Hcp1 family.
 
 
 0.984
dotU
Type IV / VI secretion system DotU; COG3455.
 
  
 0.981
PSE_2857
Type VI secretion system; COG3519.
 
  
 0.981
PSE_2858
Type VI secretion system, lysozyme-related protein; COG3518.
 
  
 0.979
PSE_2856
Hypothetical protein; COG3520.
 
  
 0.978
PSE_2846
Hypothetical protein; COG3522.
 
  
 0.976
Your Current Organism:
Pseudovibrio sp. FOBEG1
NCBI taxonomy Id: 911045
Other names: P. sp. FO-BEG1, Pseudovibrio sp. FO-BEG1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.