STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gadAGlutamate decarboxylase; Belongs to the group II decarboxylase family. (458 aa)    
Predicted Functional Partners:
PSE_4789
Glutamate synthase [NADPH] large chain.
    
 0.954
panC
Pantothenate synthetase 2; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
  
 
 0.947
PSE_0169
Gamma-glutamyltransferase.
     
 0.915
PSE_0401
Piperideine-6-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.915
PSE_0818
Gamma-glutamyltransferase.
     
 0.915
PSE_1239
Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
   
 0.915
aldH-2
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.915
PSE_1303
Trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
   
 
 0.914
PSE_1242
Glutamine synthetase family protein.
  
 
 0.912
PSE_3459
Glutamine synthetase, type I.
  
 
 0.912
Your Current Organism:
Pseudovibrio sp. FOBEG1
NCBI taxonomy Id: 911045
Other names: P. sp. FO-BEG1, Pseudovibrio sp. FO-BEG1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.