STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ITGA4Integrin subunit alpha 4. (904 aa)    
Predicted Functional Partners:
VCAM1
Vascular cell adhesion molecule 1.
    
 0.987
ITGB1
Integrin beta-1 isoform X1.
   
 0.982
PXN
Paxillin.
    
 0.969
ITGB2
Integrin beta 2.
   
 0.959
SPP1
Secreted phosphoprotein 1.
   
 0.956
JAM2
Junctional adhesion molecule B isoform X2.
     
 0.953
FN1
Fibronectin isoform X1.
    
 0.938
FLNB
Filamin-B isoform X1.
   
 0.930
SRC
Proto-oncogene tyrosine-protein kinase Src isoform X1.
   
 0.916
MADCAM1
Mucosal vascular addressin cell adhesion molecule 1.
     
  0.913
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.