Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RHBDD1Rhomboid domain-containing protein 1. (313 aa)    
Predicted Functional Partners:
ENSSCAP00000004019
annotation not available
    
 
 0.790
ENSSCAP00000021652
annotation not available
    
 
 0.790
KLHL31
Kelch-like protein 31.
      
 0.753
TMEM70
LOW QUALITY PROTEIN: transmembrane protein 70, mitochondrial.
      
 0.698
TMEM214
Transmembrane protein 214.
      
 0.695
TMEM38A
Trimeric intracellular cation channel type A isoform X1.
      
 0.688
ENSSCAP00000008334
annotation not available
    
 
 0.654
POPDC3
Popeye domain-containing protein 3.
    
 
 0.612
FAM118A
Protein FAM118A isoform X3.
    
 
 0.564
CKAP4
Cytoskeleton-associated protein 4.
    
 
 0.524
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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