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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RHBDD1Rhomboid domain-containing protein 1. (313 aa)    
Predicted Functional Partners:
ENSSCAP00000004019
annotation not available
    
 
 0.767
ENSSCAP00000021652
annotation not available
    
 
 0.767
KLHL31
Kelch-like protein 31.
      
 0.617
MRE11
Double-strand break repair protein MRE11 isoform X1.
   
 
 0.589
SPATA5
ATPase family protein 2 homolog.
    
 
 0.561
SPATA5L1
Spermatogenesis-associated protein 5-like protein 1.
    
 
 0.561
TMEM214
Transmembrane protein 214.
      
 0.541
TMEM70
LOW QUALITY PROTEIN: transmembrane protein 70, mitochondrial.
      
 0.539
TMEM38A
Trimeric intracellular cation channel type A isoform X1.
      
 0.536
POPDC3
Popeye domain-containing protein 3.
    
 
 0.529
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.