STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSCAP00000002191annotation not available (392 aa)    
Predicted Functional Partners:
SF3A1
Splicing factor 3A subunit 1.
   
 0.985
SNRPA1
U2 small nuclear ribonucleoprotein A.
   
 0.979
SF3A2
Splicing factor 3a subunit 2.
   
 0.977
SF3B1
Splicing factor 3B subunit 1 isoform X1.
   
 0.963
SF3B2
Splicing factor 3B subunit 2.
   
 0.960
SF3B3
Splicing factor 3B subunit 3.
   
 0.960
PHF5A
PHD finger protein 5A.
   
 0.954
SF3B4
LOW QUALITY PROTEIN: splicing factor 3B subunit 4.
   
 0.954
DHX15
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43.
   
 0.951
RBM17
Splicing factor 45 isoform X1.
   
 0.950
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.