STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMP3Bone morphogenetic protein 3. (458 aa)    
Predicted Functional Partners:
UBE3A
Ubiquitin-protein ligase E3 A.
      
 0.667
SOX9
LOW QUALITY PROTEIN: transcription factor SOX-9.
   
 0.629
SLC6A4
Solute carrier family 6 (neurotransmitter transporter, serotonin) member 4.
      
 0.624
SIN3A
Paired amphipathic helix protein Sin3a isoform X1.
      
 0.615
GABRG3
Gamma-aminobutyric acid receptor subunit gamma-3.
      
 0.575
PCDH19
LOW QUALITY PROTEIN: protocadherin-19.
      
 0.508
EP300
Histone acetyltransferase p300.
    
 0.507
DOLK
Dolichol kinase.
      
 0.506
GFAP
Glial fibrillary acidic protein.
   
 
 0.490
LOC103819060
Glutamine synthetase.
      
 0.475
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.