STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSDC2Cold shock domain-containing protein C2 isoform X1. (196 aa)    
Predicted Functional Partners:
POLR2F
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
  
 
 0.490
RPS23
Small subunit ribosomal protein S23e.
   
 
 0.490
SNRPD3
Small nuclear ribonucleoprotein Sm D3.
   
 0.485
DDX6
Probable ATP-dependent RNA helicase DDX6.
  
 0.482
SNRPF
Small nuclear ribonucleoprotein F.
    
  0.469
EDRF1
Erythroid differentiation-related factor 1.
      
 0.463
SNRPE
Small nuclear ribonucleoprotein E.
   
 0.461
SNRPG
Small nuclear ribonucleoprotein polypeptide G.
    
  0.460
RPS11
Small subunit ribosomal protein S11e.
   
 
 0.455
POLR2B
DNA-directed RNA polymerase II subunit RPB2.
   
 
 0.451
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.