STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO79814.1D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4). (421 aa)    
Predicted Functional Partners:
SDP14786.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.
     
 0.802
SDP75391.1
CubicO group peptidase, beta-lactamase class C family.
 
  
 0.800
SDO79841.1
Radical SAM-linked protein/radical SAM family uncharacterized protein.
       0.784
SDO41049.1
Beta-lactamase class A.
 
  
 0.733
SDP67844.1
beta-N-acetylhexosaminidase.
    
 0.669
SDP53651.1
Membrane-bound lytic murein transglycosylase D.
 
  
 0.603
SDO58594.1
Membrane-bound lytic murein transglycosylase B.
     
 0.570
SDP16964.1
Muramoyltetrapeptide carboxypeptidase.
 
   
 0.554
SDP39428.1
Hypothetical protein.
    
 0.553
SDP41185.1
CubicO group peptidase, beta-lactamase class C family.
    
 0.553
Your Current Organism:
Desulforhopalus singaporensis
NCBI taxonomy Id: 91360
Other names: D. singaporensis, DSM 12130, Desulforhopalus singaporensis Lie et al. 2000, strain Spore T1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.