STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP24995.1Type I secretion outer membrane protein, TolC family. (692 aa)    
Predicted Functional Partners:
SDP25048.1
Membrane fusion protein, adhesin transport system.
 0.982
SDP25019.1
ATP-binding cassette, subfamily C, LapB.
 
 0.962
SDO84876.1
Membrane fusion protein, adhesin transport system.
 0.922
SDP34719.1
Hemolysin D.
 
 0.908
SDO57563.1
Membrane fusion protein, multidrug efflux system.
 
 0.862
SDO89221.1
Membrane fusion protein, Cu(I)/Ag(I) efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.860
SDP49749.1
Membrane fusion protein, multidrug efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.839
SDO84850.1
ATP-binding cassette, subfamily C, LapB.
 
 0.813
SDO36104.1
Hypothetical protein.
  
 0.806
SDP24962.1
Ig-like domain (group 3).
  
 0.763
Your Current Organism:
Desulforhopalus singaporensis
NCBI taxonomy Id: 91360
Other names: D. singaporensis, DSM 12130, Desulforhopalus singaporensis Lie et al. 2000, strain Spore T1
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