STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PV08_10706TYR_PHOSPHATASE_2 domain-containing protein. (622 aa)    
Predicted Functional Partners:
PV08_09623
mRNA_triPase domain-containing protein.
    
 0.938
PV08_03302
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.931
PV08_09699
Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.
    
 0.896
PV08_04400
CFEM domain-containing protein.
    
 0.865
PV08_07353
mRNA cap 0 methyltransferase domain-containing protein.
   
 0.808
PV08_09062
RPOLD domain-containing protein.
    
 0.782
PV08_00612
S1 domain-containing protein.
    
  0.772
PV08_00518
RPOL4c domain-containing protein.
    
  0.767
PV08_00668
RPOLD domain-containing protein.
    
  0.751
PV08_07627
Nuclear cap-binding protein subunit 2.
   
 
 0.749
Your Current Organism:
Exophiala spinifera
NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera
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