PV08_11754 protein (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PV08_11754

Uncharacterized protein. (257 aa)

Predicted Functional Partners:

PV08_09423

0.648

PV08_10096

0.603

PV08_07334

0.511

PV08_07426

0.500

PV08_02349

0.500

PV08_08562

0.428

PV08_03418

0.416

PV08_07719

0.402

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_02349	PV08_03418	A0A0D1ZZF4	A0A0D1YV20	2Fe-2S ferredoxin-type domain-containing protein.	Uncharacterized protein.	0.522
PV08_02349	PV08_07719	A0A0D1ZZF4	A0A0D1ZQ68	2Fe-2S ferredoxin-type domain-containing protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.831
PV08_02349	PV08_09423	A0A0D1ZZF4	A0A0D2AZK4	2Fe-2S ferredoxin-type domain-containing protein.	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	0.821
PV08_02349	PV08_11754	A0A0D1ZZF4	A0A0D2ATE6	2Fe-2S ferredoxin-type domain-containing protein.	Uncharacterized protein.	0.500
PV08_03418	PV08_02349	A0A0D1YV20	A0A0D1ZZF4	Uncharacterized protein.	2Fe-2S ferredoxin-type domain-containing protein.	0.522
PV08_03418	PV08_07334	A0A0D1YV20	A0A0D2B7C3	Uncharacterized protein.	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.651
PV08_03418	PV08_07426	A0A0D1YV20	A0A0D1ZPA8	Uncharacterized protein.	Uncharacterized protein.	0.522
PV08_03418	PV08_07719	A0A0D1YV20	A0A0D1ZQ68	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.635
PV08_03418	PV08_08562	A0A0D1YV20	A0A0D2BQG5	Uncharacterized protein.	PKS_AT domain-containing protein.	0.446
PV08_03418	PV08_09423	A0A0D1YV20	A0A0D2AZK4	Uncharacterized protein.	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	0.586
PV08_03418	PV08_11754	A0A0D1YV20	A0A0D2ATE6	Uncharacterized protein.	Uncharacterized protein.	0.416
PV08_07334	PV08_03418	A0A0D2B7C3	A0A0D1YV20	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	Uncharacterized protein.	0.651
PV08_07334	PV08_07719	A0A0D2B7C3	A0A0D1ZQ68	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.998
PV08_07334	PV08_08562	A0A0D2B7C3	A0A0D2BQG5	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	PKS_AT domain-containing protein.	0.994
PV08_07334	PV08_09423	A0A0D2B7C3	A0A0D2AZK4	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	0.545
PV08_07334	PV08_10096	A0A0D2B7C3	A0A0D1ZCM8	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	DHFR domain-containing protein; Belongs to the dihydrofolate reductase family.	0.535
PV08_07334	PV08_11754	A0A0D2B7C3	A0A0D2ATE6	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	Uncharacterized protein.	0.511
PV08_07426	PV08_03418	A0A0D1ZPA8	A0A0D1YV20	Uncharacterized protein.	Uncharacterized protein.	0.522
PV08_07426	PV08_07719	A0A0D1ZPA8	A0A0D1ZQ68	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.831
PV08_07426	PV08_09423	A0A0D1ZPA8	A0A0D2AZK4	Uncharacterized protein.	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	0.821