STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PV08_05618Ubiquitin-60S ribosomal protein L40. (151 aa)    
Predicted Functional Partners:
PV08_03447
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
  
 0.991
PV08_07854
40S ribosomal protein S19.
   
 0.990
PV08_06235
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 0.990
PV08_03263
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
   
 0.990
RPS0
40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
  
 0.989
PV08_06322
Uncharacterized protein.
    
   0.989
RPS1
40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 0.989
PV08_08170
60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family.
  
 0.989
PV08_05699
Uncharacterized protein.
   
 0.989
PV08_04394
40S ribosomal protein S17.
   
 0.989
Your Current Organism:
Exophiala spinifera
NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.