STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRMT1LTRMT1-like; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family. (692 aa)    
Predicted Functional Partners:
TBL3
Transducin beta-like 3.
   
    0.771
NSUN2
tRNA (Cytosine(34)-C(5))-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
 
 0.740
TRMT11
tRNA (Guanine(10)-N2)-methyltransferase.
   
 
 0.710
TRUB1
Putative tRNA pseudouridine synthase 1.
   
 
 0.688
RPF2
Ribosome production factor 2.
   
  
 0.683
NSUN6
Putative methyltransferase NSUN6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
 
 0.663
THUMPD1
THUMP domain-containing protein 1.
    
 
 0.653
NTPCR
Cancer-related nucleoside-triphosphatase.
   
 
 0.650
PUS1
PseudoU_synth_1 domain-containing protein.
   
 
 0.642
PUS10
Putative tRNA pseudouridine synthase Pus10.
      
 0.641
Your Current Organism:
Pygoscelis adeliae
NCBI taxonomy Id: 9238
Other names: Adelie penguin, P. adeliae, Pygoscelis adelia
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