STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FAT1Protocadherin Fat 1. (4517 aa)    
Predicted Functional Partners:
DVL1
Segment polarity protein dishevelled DVL-1.
      
 0.541
OFD1
Oral-facial-digital syndrome 1 protein.
      
 0.530
NPHS2
Podocin.
    
 
 0.524
IFT122
Intraflagellar transport protein 122.
      
 0.521
CUX1
Homeobox protein cut-like 1.
   
  
 0.512
LIX1L
LIX1-like.
   
 0.512
WDR34
WD repeat-containing protein 34.
      
 0.509
CTNNB1
Catenin beta-1.
    
 
 0.502
PTCH1
Protein patched 1.
   
  
 0.496
FAT4
Protocadherin Fat 4.
  
0.445
Your Current Organism:
Pygoscelis adeliae
NCBI taxonomy Id: 9238
Other names: Adelie penguin, P. adeliae, Pygoscelis adelia
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.