N300_05954 protein (Calypte anna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

N300_05954

Vesicle-associated membrane protein 3. (96 aa)

Predicted Functional Partners:

N300_06367

0.991

N300_08215

0.984

N300_07255

0.984

N300_10376

0.980

N300_03959

0.975

N300_13262

0.972

N300_14155

0.968

N300_10183

0.950

N300_10539

0.949

N300_04614

0.940

Your Current Organism:

Calypte anna

NCBI taxonomy Id: 9244
Other names: C. anna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N300_03959	N300_05954	A0A091ICG7	A0A091IIH7	Peripheral plasma membrane protein CASK.	Vesicle-associated membrane protein 3.	0.975
N300_03959	N300_06367	A0A091ICG7	A0A091ICU7	Peripheral plasma membrane protein CASK.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.977
N300_03959	N300_07255	A0A091ICG7	A0A091J5R2	Peripheral plasma membrane protein CASK.	Syntaxin-1A; Belongs to the syntaxin family.	0.981
N300_03959	N300_08215	A0A091ICG7	A0A091IHQ1	Peripheral plasma membrane protein CASK.	Syntaxin-2; Belongs to the syntaxin family.	0.981
N300_03959	N300_10376	A0A091ICG7	A0A091IFK6	Peripheral plasma membrane protein CASK.	Intersectin-2.	0.701
N300_03959	N300_10539	A0A091ICG7	A0A091IHQ0	Peripheral plasma membrane protein CASK.	Syntaxin-11.	0.981
N300_03959	N300_13262	A0A091ICG7	A0A091IEV9	Peripheral plasma membrane protein CASK.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.977
N300_03959	N300_14155	A0A091ICG7	A0A091IBZ5	Peripheral plasma membrane protein CASK.	Vesicle-associated membrane protein 1.	0.975
N300_04614	N300_05954	A0A091HSC2	A0A091IIH7	Vesicle transport through interaction with t-SNAREs 1A.	Vesicle-associated membrane protein 3.	0.940
N300_04614	N300_06367	A0A091HSC2	A0A091ICU7	Vesicle transport through interaction with t-SNAREs 1A.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.464
N300_04614	N300_07255	A0A091HSC2	A0A091J5R2	Vesicle transport through interaction with t-SNAREs 1A.	Syntaxin-1A; Belongs to the syntaxin family.	0.412
N300_04614	N300_08215	A0A091HSC2	A0A091IHQ1	Vesicle transport through interaction with t-SNAREs 1A.	Syntaxin-2; Belongs to the syntaxin family.	0.412
N300_04614	N300_10183	A0A091HSC2	A0A091IDL9	Vesicle transport through interaction with t-SNAREs 1A.	Beta-soluble NSF attachment protein.	0.997
N300_04614	N300_10539	A0A091HSC2	A0A091IHQ0	Vesicle transport through interaction with t-SNAREs 1A.	Syntaxin-11.	0.412
N300_04614	N300_13262	A0A091HSC2	A0A091IEV9	Vesicle transport through interaction with t-SNAREs 1A.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.464
N300_04614	N300_14155	A0A091HSC2	A0A091IBZ5	Vesicle transport through interaction with t-SNAREs 1A.	Vesicle-associated membrane protein 1.	0.934
N300_05954	N300_03959	A0A091IIH7	A0A091ICG7	Vesicle-associated membrane protein 3.	Peripheral plasma membrane protein CASK.	0.975
N300_05954	N300_04614	A0A091IIH7	A0A091HSC2	Vesicle-associated membrane protein 3.	Vesicle transport through interaction with t-SNAREs 1A.	0.940
N300_05954	N300_06367	A0A091IIH7	A0A091ICU7	Vesicle-associated membrane protein 3.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.991
N300_05954	N300_07255	A0A091IIH7	A0A091J5R2	Vesicle-associated membrane protein 3.	Syntaxin-1A; Belongs to the syntaxin family.	0.984