STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL6A3Collagen type VI alpha 3 chain. (3174 aa)    
Predicted Functional Partners:
COL6A1
Collagen type VI alpha 1 chain.
   
0.543
COL6A2
Uncharacterized protein.
   
0.532
COL1A1
Uncharacterized protein.
   
 
0.530
COL1A2-2
Fibrillar collagen NC1 domain-containing protein.
   
 
0.519
COL1A2
Collagen type I alpha 2 chain.
   
 
0.477
COL3A1
Collagen type III alpha 1 chain.
   
 
0.471
K7EE18_ORNAN
Uncharacterized protein.
   
 0.466
K7EF43_ORNAN
VWFA domain-containing protein.
   
 0.466
F7ELZ8_ORNAN
Uncharacterized protein.
   
 0.464
COPS8
COP9 signalosome subunit 8.
    
 0.415
Your Current Organism:
Ornithorhynchus anatinus
NCBI taxonomy Id: 9258
Other names: O. anatinus, Platypus anatinus, duck-billed platypus, duckbill platypus, platypus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.