STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ugpB-2Glycerol-3-phosphate-binding periplasmic protein. (431 aa)    
Predicted Functional Partners:
BAM01356.1
Putative ABC transporter permease protein.
   0.873
BAM01355.1
Putative ABC transporter permease protein.
 
   0.728
BAM01358.1
Putative LacI family transcriptional regulator.
       0.628
BAM00753.1
Putative ABC transporter substrate binding protein.
  
     0.584
BAL98612.1
Putative sugar ABC transporter substrate binding protein.
  
     0.559
BAL99833.1
Putative ABC transporter permease protein.
 
   0.510
BAM01063.1
Putative ABC transporter permease protein.
  
   0.502
BAL98614.1
Putative sugar ABC transporter permease protein.
  
   0.497
BAM01141.1
Putative ABC transporter permease protein.
 
   0.497
BAM01266.1
Putative ABC transporter permease protein.
 
   0.491
Your Current Organism:
Caldilinea aerophila
NCBI taxonomy Id: 926550
Other names: C. aerophila DSM 14535 = NBRC 104270, Caldilinea aerophila DSM 14535, Caldilinea aerophila DSM 14535 = NBRC 104270, Caldilinea aerophila NBRC 104270, Caldilinea aerophila NBRC 104270 = DSM 14535, Caldilinea aerophila STL-6-O1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.