STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA77882.1Hypothetical protein. (480 aa)    
Predicted Functional Partners:
AGA77881.1
Hypothetical protein.
       0.767
AGA77883.1
PFAM: Bacterial regulatory proteins, gntR family.
 
    0.706
AGA77880.1
Esterase/lipase; PFAM: Prolyl oligopeptidase family.
       0.627
pyrB
PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
   
    0.589
AGA77879.1
PFAM: Bacterial regulatory proteins, gntR family.
 
    0.572
AGA77043.1
Carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: carbamoyl-phosphate synthase, large subunit.
   
    0.557
carA
PFAM: Carbamoyl-phosphate synthase small chain, CPSase domain; Glutamine amidotransferase class-I; TIGRFAM: carbamoyl-phosphate synthase, small subunit; Belongs to the CarA family.
   
    0.547
AGA80022.1
Hypothetical protein.
  
     0.513
AGA77839.1
PFAM: FGGY family of carbohydrate kinases, N-terminal domain.
 
     0.500
AGA76753.1
RagB/SusD family protein; PFAM: SusD family.
  
     0.465
Your Current Organism:
Echinicola vietnamensis
NCBI taxonomy Id: 926556
Other names: E. vietnamensis DSM 17526, Echinicola vietnamensis DSM 17526
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.