STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIJ40273.1TonB-linked outer membrane protein, SusC/RagA family; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family. (1086 aa)    
Predicted Functional Partners:
EIJ40272.1
RagB/SusD family protein; PFAM: SusD family.
 
   0.952
EIJ38270.1
RagB/SusD family protein; PFAM: SusD family.
  
 
   0.838
EIJ40654.1
RagB/SusD family protein; PFAM: SusD family.
  
 
   0.826
EIJ37358.1
RagB/SusD family protein; PFAM: SusD family.
 
 
   0.816
EIJ37427.1
RagB/SusD family protein; PFAM: SusD family.
 
 
   0.808
EIJ37473.1
RagB/SusD family protein; PFAM: SusD family.
  
 
   0.797
EIJ40748.1
RagB/SusD family protein; PFAM: SusD family.
 
 
   0.738
EIJ40836.1
RagB/SusD family protein; PFAM: SusD family.
  
 
   0.714
EIJ38535.1
RagB/SusD family protein; PFAM: SusD family.
  
 
   0.682
EIJ40803.1
RagB/SusD family protein; PFAM: SusD family.
  
 
   0.657
Your Current Organism:
Joostella marina
NCBI taxonomy Id: 926559
Other names: J. marina DSM 19592, Joostella marina DSM 19592, Joostella marina En5
Server load: low (24%) [HD]