STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKF04362.1OmpA family protein. (333 aa)    
Predicted Functional Partners:
AKF10563.1
Hypothetical protein.
  
     0.607
AKF04360.1
Calcium-binding acidic-repeat protein.
 
     0.584
AKF04361.1
Hypothetical protein.
       0.565
AKF03557.1
Hypothetical protein.
  
     0.553
AKF04937.1
Hypothetical protein.
  
     0.550
AKF08239.1
Putative diheme cytochrome c-553.
  
     0.518
AKF10591.1
TonB family protein / TonB-dependent receptor.
  
     0.513
AKF04363.1
Hypothetical protein.
       0.506
AKF03556.1
Sodium iodide symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
     0.494
AKF09336.1
TonB family protein / TonB-dependent receptor.
  
     0.493
Your Current Organism:
Sandaracinus amylolyticus
NCBI taxonomy Id: 927083
Other names: DSM 53668, NCCB 100362, S. amylolyticus, Sandaracinus amylolyticus Mohr et al. 2012, Sorangiineae bacterium NOSO 4, strain NOSO-4
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