STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC56655.1Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein. (126 aa)    
Predicted Functional Partners:
soxR
Transcriptional regulator, MerR family.
 
     0.905
trpB
Tryptophan synthase, beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
   
  0.769
scpA_3
methylmalonyl-CoA mutase.
    
 0.735
scpA_1
(R)-ethylmalonyl-CoA mutase.
    
 0.735
ccrA2
crotonyl-CoA carboxylase/reductase.
    
  0.647
nuoI
NADH dehydrogenase subunit I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
 
 0.629
SFD07246.1
methylmalonyl-CoA epimerase /ethylmalonyl-CoA epimerase.
    
 0.622
ppsA
Pyruvate phosphate dikinase, PEP/pyruvate binding domain.
  
 
  0.556
SFC29485.1
Protein of unknown function.
  
  
  0.527
sdhC
Succinate dehydrogenase subunit C.
   
    0.491
Your Current Organism:
Epibacterium multivorans
NCBI taxonomy Id: 928856
Other names: CECT 7557, DSM 26470, E. multivorans, KCTC 23350, Tropicibacter multivorans, Tropicibacter multivorans Lucena et al. 2012, Tropicibacter sp. CECT 7557, strain MD5
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