STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK02819.1KEGG: lby:Lbys_3237 hypothetical protein; SPTR: Putative uncharacterized protein. (354 aa)    
Predicted Functional Partners:
AFK02818.1
Fumarate reductase/succinate dehydrogenase flavoprotein domain protein; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: putative bacillithiol system thiol disulfide oxidoreductase, YpdA family; COGs: COG0492 Thioredoxin reductase; InterPro IPR003953; KEGG: lby:Lbys_2762 fad-dependent pyridine nucleotide-disulfide oxidoreductase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; SPTR: FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
  
    0.535
AFK02821.1
KEGG: sli:Slin_5919 hypothetical protein; SPTR: Putative orphan protein.
  
    0.474
AFK02820.1
Membrane-associated zinc metalloprotease; PFAM: Peptidase family M50; PDZ domain (Also known as DHR or GLGF); TIGRFAM: RIP metalloprotease RseP; COGs: COG0750 membrane-associated Zn-dependent protease 1; InterPro IPR008915:IPR001478:IPR004387; KEGG: lby:Lbys_2046 peptidase M50; PFAM: Peptidase M50; PDZ/DHR/GLGF; SPTR: Peptidase M50; TIGRFAM: Peptidase M50, putative membrane-associated zinc metallopeptidase.
       0.465
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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