STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK02952.1Hypothetical protein; PFAM: Transposase IS200 like; InterPro IPR011462; KEGG: sli:Slin_5035 hypothetical protein; SPTR: Putative uncharacterized protein. (223 aa)    
Predicted Functional Partners:
AFK02951.1
PFAM: Protein of unknown function (DUF1469); KEGG: lby:Lbys_2708 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.596
AFK03612.1
KEGG: zpr:ZPR_4196 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.585
AFK03297.1
PFAM: S23 ribosomal protein; InterPro IPR008815; KEGG: mtt:Ftrac_1685 s23 ribosomal protein; PFAM: 23S rRNA-associated protein; SPTR: S23 ribosomal protein.
  
     0.454
AFK02907.1
PFAM: Protein of unknown function (DUF820); COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: Putative uncharacterized protein.
 
     0.446
AFK02953.1
PFAM: GatB/GatE catalytic domain; GatB domain; TIGRFAM: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit; COGs: COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog); HAMAP: Glutamyl-tRNA(Gln) amidotransferase, B subunit; InterPro IPR006075:IPR006107:IPR018027:IPR004413; KEGG: sli:Slin_5958 glutamyl-tRNA(Gln) amidotransferase subunit beta; PFAM: Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal; Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, central region; Asn/Gln amidotransferase; SPTR: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase su [...]
       0.434
AFK02163.1
PFAM: Protein of unknown function (DUF433); COGs: COG2442 conserved hypothetical protein; InterPro IPR007367; KEGG: adg:Adeg_0280 protein of unknown function DUF433; PFAM: Protein of unknown function DUF433; SPTR: Putative uncharacterized protein.
  
     0.417
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.