STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK03948.1PFAM: Bacterial regulatory proteins, tetR family; COGs: COG1309 Transcriptional regulator; InterPro IPR001647; KEGG: sli:Slin_3888 TetR family transcriptional regulator; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family. (204 aa)    
Predicted Functional Partners:
AFK03947.1
KEGG: sli:Slin_3889 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.623
AFK03954.1
KEGG: sli:Slin_3883 hypothetical protein; SPTR: Putative uncharacterized protein.
 
 
   0.620
AFK03946.1
PFAM: Bacterial regulatory proteins, tetR family; InterPro IPR001647; KEGG: rbi:RB2501_04325 putative transcriptional regulator; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family.
 
    
0.549
AFK03949.1
PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: hydrogenase (NiFe) small subunit (hydA); COGs: COG1740 Ni Fe-hydrogenase I small subunit; InterPro IPR006137; KEGG: sli:Slin_3887 NADH ubiquinone oxidoreductase 20 kDa subunit; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; SPTR: NADH ubiquinone oxidoreductase 20 kDa subunit.
 
   
 0.514
AFK03955.1
PFAM: Hydrogenase expression/synthesis hypA family; COGs: COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression); InterPro IPR000688; KEGG: sli:Slin_3882 hydrogenase expression/synthesis HypA; PFAM: Hydrogenase nickel incorporation protein HypA/HybF; SPTR: Hydrogenase expression/synthesis HypA.
 
     0.511
AFK03950.1
PFAM: Nickel-dependent hydrogenase; COGs: COG0374 Ni Fe-hydrogenase I large subunit; InterPro IPR001501; KEGG: sli:Slin_3886 nickel-dependent hydrogenase large subunit; PFAM: Nickel-dependent hydrogenase, large subunit; SPTR: Nickel-dependent hydrogenase large subunit.
 
     0.432
AFK03951.1
PFAM: Hydrogenase maturation protease; TIGRFAM: hydrogenase maturation protease; COGs: COG0680 Ni Fe-hydrogenase maturation factor; InterPro IPR000671; KEGG: sli:Slin_3885 hydrogenase maturation protease; PFAM: Peptidase A31, hydrogen uptake protein; SPTR: Hydrogenase maturation protease; TIGRFAM: Peptidase A31, hydrogen uptake protein.
 
     0.428
AFK04644.1
PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; InterPro IPR012910:IPR000531; KEGG: sli:Slin_5213 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug.
  
     0.418
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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