STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCL11BBAF chromatin remodeling complex subunit BCL11B. (867 aa)    
Predicted Functional Partners:
BATF
Basic leucine zipper ATF-like transcription factor.
    
 0.707
TBR1
T-box brain transcription factor 1.
    
 
 0.543
CUX1
Homeobox protein cut-like.
    
 
 0.539
NKAP
Nkap_C domain-containing protein.
      
 0.539
BCL11A
BAF chromatin remodeling complex subunit BCL11A.
  
 
0.532
ACTL6A
Actin like 6A; Belongs to the actin family.
   
 0.511
RUNX1
Runt-related transcription factor; Forms the heterodimeric complex core-binding factor (CBF) with CBFB. RUNX members modulate the transcription of their target genes through recognizing the core consensus binding sequence 5'- TGTGGT-3', or very rarely, 5'-TGCGGT-3', within their regulatory regions via their runt domain, while CBFB is a non-DNA-binding regulatory subunit that allosterically enhances the sequence-specific DNA-binding capacity of RUNX.
    
 0.497
MTA1
Metastasis associated 1.
    
 0.459
MTA2
Metastasis associated 1 family member 2.
    
 0.457
BRD9
Bromodomain containing 9.
     
 0.452
Your Current Organism:
Sarcophilus harrisii
NCBI taxonomy Id: 9305
Other names: S. harrisii, Sarcophilus laniarius, Tasmanian devil
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