Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
APP | CNTN3 | ENSSHAP00000002408 | ENSSHAP00000011788 | Amyloid beta precursor protein. | Contactin 3. | 0.700 |
APP | L1CAM | ENSSHAP00000002408 | ENSSHAP00000003728 | Amyloid beta precursor protein. | L1 cell adhesion molecule. | 0.425 |
C1orf43 | CNTN3 | ENSSHAP00000015136 | ENSSHAP00000011788 | Chromosome 1 open reading frame 43. | Contactin 3. | 0.535 |
CHL1 | CNTN3 | ENSSHAP00000011793 | ENSSHAP00000011788 | Cell adhesion molecule L1 like. | Contactin 3. | 0.563 |
CHL1 | G3WYM3_SARHA | ENSSHAP00000011793 | ENSSHAP00000020528 | Cell adhesion molecule L1 like. | Uncharacterized protein. | 0.555 |
CHL1 | NFASC | ENSSHAP00000011793 | ENSSHAP00000013456 | Cell adhesion molecule L1 like. | Neurofascin. | 0.464 |
CHL1 | PTPRG | ENSSHAP00000011793 | ENSSHAP00000021113 | Cell adhesion molecule L1 like. | Protein tyrosine phosphatase receptor type G. | 0.565 |
CNTN3 | APP | ENSSHAP00000011788 | ENSSHAP00000002408 | Contactin 3. | Amyloid beta precursor protein. | 0.700 |
CNTN3 | C1orf43 | ENSSHAP00000011788 | ENSSHAP00000015136 | Contactin 3. | Chromosome 1 open reading frame 43. | 0.535 |
CNTN3 | CHL1 | ENSSHAP00000011788 | ENSSHAP00000011793 | Contactin 3. | Cell adhesion molecule L1 like. | 0.563 |
CNTN3 | DMRT3 | ENSSHAP00000011788 | ENSSHAP00000009959 | Contactin 3. | Doublesex and mab-3 related transcription factor 3. | 0.537 |
CNTN3 | G3WYM3_SARHA | ENSSHAP00000011788 | ENSSHAP00000020528 | Contactin 3. | Uncharacterized protein. | 0.555 |
CNTN3 | L1CAM | ENSSHAP00000011788 | ENSSHAP00000003728 | Contactin 3. | L1 cell adhesion molecule. | 0.571 |
CNTN3 | NFASC | ENSSHAP00000011788 | ENSSHAP00000013456 | Contactin 3. | Neurofascin. | 0.570 |
CNTN3 | NRCAM | ENSSHAP00000011788 | ENSSHAP00000009679 | Contactin 3. | Neuronal cell adhesion molecule. | 0.563 |
CNTN3 | PTPRG | ENSSHAP00000011788 | ENSSHAP00000021113 | Contactin 3. | Protein tyrosine phosphatase receptor type G. | 0.806 |
CNTN3 | SUSD1 | ENSSHAP00000011788 | ENSSHAP00000016857 | Contactin 3. | Sushi domain containing 1. | 0.526 |
DMRT3 | CNTN3 | ENSSHAP00000009959 | ENSSHAP00000011788 | Doublesex and mab-3 related transcription factor 3. | Contactin 3. | 0.537 |
G3WYM3_SARHA | CHL1 | ENSSHAP00000020528 | ENSSHAP00000011793 | Uncharacterized protein. | Cell adhesion molecule L1 like. | 0.555 |
G3WYM3_SARHA | CNTN3 | ENSSHAP00000020528 | ENSSHAP00000011788 | Uncharacterized protein. | Contactin 3. | 0.555 |
page 1 of 3