Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AGO2 | FMR1 | ENSSHAP00000011147 | ENSSHAP00000015168 | Protein argonaute-2; Required for RNA-mediated gene silencing (RNAi) by the RNA- induced silencing complex (RISC). The 'minimal RISC' appears to include AGO2 bound to a short guide RNA such as a microRNA (miRNA) or short interfering RNA (siRNA). These guide RNAs direct RISC to complementary mRNAs that are targets for RISC-mediated gene silencing. The precise mechanism of gene silencing depends on the degree of complementarity between the miRNA or siRNA and its target. Binding of RISC to a perfectly complementary mRNA generally results in silencing due to endonucleolytic cleavage of the [...] | Fragile X mental retardation 1. | 0.774 |
AGO2 | FXR1 | ENSSHAP00000011147 | ENSSHAP00000022005 | Protein argonaute-2; Required for RNA-mediated gene silencing (RNAi) by the RNA- induced silencing complex (RISC). The 'minimal RISC' appears to include AGO2 bound to a short guide RNA such as a microRNA (miRNA) or short interfering RNA (siRNA). These guide RNAs direct RISC to complementary mRNAs that are targets for RISC-mediated gene silencing. The precise mechanism of gene silencing depends on the degree of complementarity between the miRNA or siRNA and its target. Binding of RISC to a perfectly complementary mRNA generally results in silencing due to endonucleolytic cleavage of the [...] | FMR1 autosomal homolog 1. | 0.774 |
AGO2 | FXR2 | ENSSHAP00000011147 | ENSSHAP00000018466 | Protein argonaute-2; Required for RNA-mediated gene silencing (RNAi) by the RNA- induced silencing complex (RISC). The 'minimal RISC' appears to include AGO2 bound to a short guide RNA such as a microRNA (miRNA) or short interfering RNA (siRNA). These guide RNAs direct RISC to complementary mRNAs that are targets for RISC-mediated gene silencing. The precise mechanism of gene silencing depends on the degree of complementarity between the miRNA or siRNA and its target. Binding of RISC to a perfectly complementary mRNA generally results in silencing due to endonucleolytic cleavage of the [...] | FMR1 autosomal homolog 2. | 0.665 |
CPEB4 | FXR1 | ENSSHAP00000017579 | ENSSHAP00000022005 | Cytoplasmic polyadenylation element binding protein 4. | FMR1 autosomal homolog 1. | 0.672 |
CPEB4 | FXR2 | ENSSHAP00000017579 | ENSSHAP00000018466 | Cytoplasmic polyadenylation element binding protein 4. | FMR1 autosomal homolog 2. | 0.570 |
CYFIP1 | CYFIP2 | ENSSHAP00000006642 | ENSSHAP00000018885 | Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family. | Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family. | 0.954 |
CYFIP1 | FMR1 | ENSSHAP00000006642 | ENSSHAP00000015168 | Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family. | Fragile X mental retardation 1. | 0.775 |
CYFIP1 | FXR1 | ENSSHAP00000006642 | ENSSHAP00000022005 | Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family. | FMR1 autosomal homolog 1. | 0.976 |
CYFIP1 | FXR2 | ENSSHAP00000006642 | ENSSHAP00000018466 | Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family. | FMR1 autosomal homolog 2. | 0.976 |
CYFIP2 | CYFIP1 | ENSSHAP00000018885 | ENSSHAP00000006642 | Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family. | Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family. | 0.954 |
CYFIP2 | FMR1 | ENSSHAP00000018885 | ENSSHAP00000015168 | Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family. | Fragile X mental retardation 1. | 0.768 |
CYFIP2 | FXR1 | ENSSHAP00000018885 | ENSSHAP00000022005 | Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family. | FMR1 autosomal homolog 1. | 0.977 |
CYFIP2 | FXR2 | ENSSHAP00000018885 | ENSSHAP00000018466 | Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family. | FMR1 autosomal homolog 2. | 0.977 |
FMR1 | AGO2 | ENSSHAP00000015168 | ENSSHAP00000011147 | Fragile X mental retardation 1. | Protein argonaute-2; Required for RNA-mediated gene silencing (RNAi) by the RNA- induced silencing complex (RISC). The 'minimal RISC' appears to include AGO2 bound to a short guide RNA such as a microRNA (miRNA) or short interfering RNA (siRNA). These guide RNAs direct RISC to complementary mRNAs that are targets for RISC-mediated gene silencing. The precise mechanism of gene silencing depends on the degree of complementarity between the miRNA or siRNA and its target. Binding of RISC to a perfectly complementary mRNA generally results in silencing due to endonucleolytic cleavage of the [...] | 0.774 |
FMR1 | CYFIP1 | ENSSHAP00000015168 | ENSSHAP00000006642 | Fragile X mental retardation 1. | Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family. | 0.775 |
FMR1 | CYFIP2 | ENSSHAP00000015168 | ENSSHAP00000018885 | Fragile X mental retardation 1. | Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family. | 0.768 |
FMR1 | FXR1 | ENSSHAP00000015168 | ENSSHAP00000022005 | Fragile X mental retardation 1. | FMR1 autosomal homolog 1. | 0.708 |
FMR1 | FXR2 | ENSSHAP00000015168 | ENSSHAP00000018466 | Fragile X mental retardation 1. | FMR1 autosomal homolog 2. | 0.745 |
FMR1 | SERBP1 | ENSSHAP00000015168 | ENSSHAP00000009589 | Fragile X mental retardation 1. | SERPINE1 mRNA binding protein 1. | 0.582 |
FMR1 | TDRD3 | ENSSHAP00000015168 | ENSSHAP00000014026 | Fragile X mental retardation 1. | Tudor domain containing 3. | 0.694 |
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