STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDX2Caudal type homeobox 2. (298 aa)    
Predicted Functional Partners:
OGG1
OGG_N domain-containing protein.
      
 0.652
GATA6
GATA binding protein 6.
      
 0.649
SOX17
Uncharacterized protein.
    
 
 0.585
FGF4
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
    
 
 0.580
NFKB1
Nuclear factor kappa B subunit 1.
    
 
 0.578
FOXA2
Forkhead box A2.
   
  
 0.573
POU5F1
POU domain protein.
    
 
 0.572
KRT20
Keratin 20; Belongs to the intermediate filament family.
   
  
 0.563
TIMP2
TIMP metallopeptidase inhibitor 2.
      
 0.557
EOMES
Eomesodermin.
    
 
 0.557
Your Current Organism:
Sarcophilus harrisii
NCBI taxonomy Id: 9305
Other names: S. harrisii, Sarcophilus laniarius, Tasmanian devil
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