STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABX07942.1Hypothetical protein. (200 aa)    
Predicted Functional Partners:
ABX07941.1
Hypothetical protein.
     0.993
rsbW
COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms].
 
 
 0.903
ABX08625.1
COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.818
argH
Fumarate lyase:Delta crystallin; COG165 Argininosuccinate lyase [Amino acid transport and metabolism].
       0.671
ftsY
Signal recognition particle docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).
       0.666
nusB
Antitermination protein NusB; COG781 Transcription termination factor [Transcription].
       0.665
ABX07938.1
COG2928 Uncharacterized conserved protein [Function unknown].
       0.595
ABX07936.1
Flp pilus assembly protein TadD; Contains TPR repeats.
 
     0.504
ABX09185.1
COG3063 Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion].
 
    0.449
queG
Uncharacterized Fe-S protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family.
       0.417
Your Current Organism:
Prochlorococcus marinus MIT9211
NCBI taxonomy Id: 93059
Other names: P. marinus str. MIT 9211, Prochlorococcus marinus str. MIT 9211, Prochlorococcus sp. MIT 9211, Prochlorococcus sp. MIT9211
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