STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABV50432.1COG1793 ATP-dependent DNA ligase [DNA replication, recombination, and repair]. (546 aa)    
Predicted Functional Partners:
ABV50433.1
COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis].
 0.995
ABV50430.1
Serine/threonine specific protein phosphatase; COG1407 Predicted ICC-like phosphoesterases [General function prediction only].
 
   
 0.960
ABV50431.1
COG1201 Lhr-like helicases [General function prediction only].
 
    0.960
ABV51566.1
COG1793 ATP-dependent DNA ligase [DNA replication, recombination, and repair].
  
  
  0.928
ABV51204.1
Hypothetical protein.
     
 0.905
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.875
ABV50434.1
Possible COMC family.
       0.746
xthA
COG708 Exonuclease III [DNA replication, recombination, and repair].
  
 
 0.692
holB
DNA polymerase III, delta prime subunit.
   
 0.663
ABV50435.1
Possible Major surface glycoprotein.
       0.601
Your Current Organism:
Prochlorococcus marinus MIT9215
NCBI taxonomy Id: 93060
Other names: P. marinus str. MIT 9215, Prochlorococcus marinus MIT 9215, Prochlorococcus marinus str. MIT 9215, Prochlorococcus sp. MIT 9215, Prochlorococcus sp. MIT9215
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