Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SiRe_0069 | ppcA | SiRe_0069 | SiRe_0068 | P-loop ATPase/GTPase-like protein. | Phosphoenolpyruvate carboxylase; Catalyzes the irreversible beta-carboxylation of phosphoenolpyruvate (PEP) to form oxaloacetate (OAA), a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle. Belongs to the PEPCase type 2 family. | 0.802 |
SiRe_0741 | SiRe_1068 | SiRe_0741 | SiRe_1068 | Malate synthase. | Formate dehydrogenase, alpha subunit. | 0.803 |
SiRe_0741 | SiRe_2176 | SiRe_0741 | SiRe_2176 | Malate synthase. | Cyclase family protein. | 0.810 |
SiRe_0741 | SiRe_2618 | SiRe_0741 | SiRe_2618 | Malate synthase. | 2-methylcitrate synthase/citrate synthase II. | 0.981 |
SiRe_0741 | SiRe_2622 | SiRe_0741 | SiRe_2622 | Malate synthase. | Lactate/malate dehydrogenase; Belongs to the LDH/MDH superfamily. | 0.962 |
SiRe_0741 | pckG | SiRe_0741 | SiRe_0398 | Malate synthase. | Phosphoenolpyruvate carboxykinase (GTP); Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle. | 0.860 |
SiRe_0741 | ppcA | SiRe_0741 | SiRe_0068 | Malate synthase. | Phosphoenolpyruvate carboxylase; Catalyzes the irreversible beta-carboxylation of phosphoenolpyruvate (PEP) to form oxaloacetate (OAA), a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle. Belongs to the PEPCase type 2 family. | 0.800 |
SiRe_1068 | SiRe_0741 | SiRe_1068 | SiRe_0741 | Formate dehydrogenase, alpha subunit. | Malate synthase. | 0.803 |
SiRe_1068 | SiRe_2176 | SiRe_1068 | SiRe_2176 | Formate dehydrogenase, alpha subunit. | Cyclase family protein. | 0.902 |
SiRe_1068 | SiRe_2622 | SiRe_1068 | SiRe_2622 | Formate dehydrogenase, alpha subunit. | Lactate/malate dehydrogenase; Belongs to the LDH/MDH superfamily. | 0.819 |
SiRe_1068 | pckG | SiRe_1068 | SiRe_0398 | Formate dehydrogenase, alpha subunit. | Phosphoenolpyruvate carboxykinase (GTP); Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle. | 0.800 |
SiRe_1068 | ppcA | SiRe_1068 | SiRe_0068 | Formate dehydrogenase, alpha subunit. | Phosphoenolpyruvate carboxylase; Catalyzes the irreversible beta-carboxylation of phosphoenolpyruvate (PEP) to form oxaloacetate (OAA), a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle. Belongs to the PEPCase type 2 family. | 0.800 |
SiRe_1105 | SiRe_1199 | SiRe_1105 | SiRe_1199 | Pyruvate kinase; Belongs to the pyruvate kinase family. | Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family. | 0.923 |
SiRe_1105 | SiRe_2618 | SiRe_1105 | SiRe_2618 | Pyruvate kinase; Belongs to the pyruvate kinase family. | 2-methylcitrate synthase/citrate synthase II. | 0.420 |
SiRe_1105 | SiRe_2622 | SiRe_1105 | SiRe_2622 | Pyruvate kinase; Belongs to the pyruvate kinase family. | Lactate/malate dehydrogenase; Belongs to the LDH/MDH superfamily. | 0.777 |
SiRe_1105 | eno | SiRe_1105 | SiRe_1171 | Pyruvate kinase; Belongs to the pyruvate kinase family. | Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | 0.993 |
SiRe_1105 | pckG | SiRe_1105 | SiRe_0398 | Pyruvate kinase; Belongs to the pyruvate kinase family. | Phosphoenolpyruvate carboxykinase (GTP); Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle. | 0.923 |
SiRe_1105 | ppcA | SiRe_1105 | SiRe_0068 | Pyruvate kinase; Belongs to the pyruvate kinase family. | Phosphoenolpyruvate carboxylase; Catalyzes the irreversible beta-carboxylation of phosphoenolpyruvate (PEP) to form oxaloacetate (OAA), a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle. Belongs to the PEPCase type 2 family. | 0.907 |
SiRe_1199 | SiRe_1105 | SiRe_1199 | SiRe_1105 | Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family. | Pyruvate kinase; Belongs to the pyruvate kinase family. | 0.923 |
SiRe_1199 | eno | SiRe_1199 | SiRe_1171 | Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family. | Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | 0.933 |
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