STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D0E0V6Unplaced genomic scaffold scaffold_349, whole genome shotgun sequence. (1176 aa)    
Predicted Functional Partners:
A0A0D0DU92
Unplaced genomic scaffold scaffold_98, whole genome shotgun sequence.
    
 0.987
A0A0D0DFJ5
Unplaced genomic scaffold scaffold_163, whole genome shotgun sequence.
    
 0.981
A0A0D0EAK2
Unplaced genomic scaffold scaffold_12, whole genome shotgun sequence.
   
 0.979
A0A0D0E3B2
Unplaced genomic scaffold scaffold_565, whole genome shotgun sequence.
   
 0.954
A0A0D0DY87
Unplaced genomic scaffold scaffold_6, whole genome shotgun sequence.
    
 0.951
A0A0D0ECG5
General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.
    
 0.950
A0A0D0D8V6
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.914
A0A0D0BQC1
Unplaced genomic scaffold scaffold_4645, whole genome shotgun sequence.
   
 0.905
A0A0D0BZU6
Unplaced genomic scaffold scaffold_2575, whole genome shotgun sequence.
   
 0.905
A0A0D0DCA3
Unplaced genomic scaffold scaffold_1815, whole genome shotgun sequence.
   
 0.905
Your Current Organism:
Paxillus rubicundulus
NCBI taxonomy Id: 930991
Other names: P. rubicundulus Ve08.2h10, Paxillus rubicundulus Ve08.2h10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.