STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D0E582Unplaced genomic scaffold scaffold_164, whole genome shotgun sequence. (961 aa)    
Predicted Functional Partners:
A0A0D0ED92
Unplaced genomic scaffold scaffold_6, whole genome shotgun sequence.
   
 0.999
A0A0D0EDB5
Unplaced genomic scaffold scaffold_4, whole genome shotgun sequence.
    
 0.998
A0A0D0DFJ5
Unplaced genomic scaffold scaffold_163, whole genome shotgun sequence.
   
 0.977
A0A0D0DU92
Unplaced genomic scaffold scaffold_98, whole genome shotgun sequence.
    
 0.977
A0A0D0EAK2
Unplaced genomic scaffold scaffold_12, whole genome shotgun sequence.
    
 0.956
A0A0D0DJE8
Unplaced genomic scaffold scaffold_68, whole genome shotgun sequence.
    
 0.948
A0A0D0DTM8
DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.
   
 0.944
A0A0D0ECG5
General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.
    
 0.935
A0A0D0DG91
Unplaced genomic scaffold scaffold_142, whole genome shotgun sequence.
    
 0.933
A0A0D0DZX2
Unplaced genomic scaffold scaffold_170, whole genome shotgun sequence.
    
 0.930
Your Current Organism:
Paxillus rubicundulus
NCBI taxonomy Id: 930991
Other names: P. rubicundulus Ve08.2h10, Paxillus rubicundulus Ve08.2h10
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