STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C448_12011COG3415 Transposase and inactivated derivatives. (368 aa)    
Predicted Functional Partners:
C448_01224
Transposase IS4 family protein; COG3385 FOG: Transposase and inactivated derivatives.
  
     0.590
C448_08254
Hypothetical protein.
  
     0.570
C448_09442
COG1378 Predicted transcriptional regulators.
  
     0.541
C448_12516
Hypothetical protein; COG3211 Predicted phosphatase.
  
     0.514
C448_09627
Type I phosphodiesterase/nucleotide pyrophosphatase.
  
     0.469
C448_12016
Hypothetical protein; COG3385 FOG: Transposase and inactivated derivatives.
       0.465
C448_10652
COG0438 Glycosyltransferase.
  
     0.449
C448_05793
COG2332 Cytochrome c-type biogenesis protein CcmE.
  
     0.435
C448_08484
Peptide ABC transporter substrate-binding protein; COG0747 ABC-type dipeptide transport system, periplasmic component.
  
     0.406
Your Current Organism:
Halococcus morrhuae
NCBI taxonomy Id: 931277
Other names: H. morrhuae DSM 1307, Halococcus morrhuae DSM 1307, Halococcus morrhuae JCM 8876, Halococcus morrhuae NRC 16008
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.