STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM77932.1Transcriptional regulator, RpiR family. (276 aa)    
Predicted Functional Partners:
SEM77894.1
5-dehydro-2-deoxygluconokinase.
 
  
  0.914
SEM77812.1
2-keto-myo-inositol dehydratase.
 
     0.850
SEM77855.1
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; Belongs to the TPP enzyme family.
 
   
 0.817
SEM77772.1
5-deoxy-glucuronate isomerase.
 
   
 0.800
SEM77970.1
Predicted dehydrogenase.
 
     0.731
SEM41173.1
Inosose dehydratase.
 
     0.648
SEM41142.1
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing); Belongs to the TPP enzyme family.
 
   
 0.486
SEM46183.1
Hypothetical protein.
      
 0.418
SEM46781.1
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
      
 0.418
SEM46830.1
Hypothetical protein.
      
 0.418
Your Current Organism:
Gemmobacter aquatilis
NCBI taxonomy Id: 933059
Other names: ATCC 49971, DSM 3857, G. aquatilis
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