STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F8QBR5_SERL3TauD domain-containing protein. (351 aa)    
Predicted Functional Partners:
F8PZU0_SERL3
PHD-type domain-containing protein.
    
 0.615
F8PFZ4_SERL3
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.588
F8PYY2_SERL3
Uncharacterized protein.
    
  0.584
F8Q426_SERL3
Uncharacterized protein.
    
  0.584
F8QD04_SERL3
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
  0.584
F8PUU9_SERL3
RPOLD domain-containing protein.
    
  0.560
F8PQ76_SERL3
Cleavage and polyadenylation specificity factor subunit 2.
    
 0.552
F8PW99_SERL3
Uncharacterized protein.
    
 0.552
F8QCN1_SERL3
DRMBL domain-containing protein.
    
 0.552
F8Q5B5_SERL3
RPOL4c domain-containing protein.
    
  0.542
Your Current Organism:
Serpula lacrymans
NCBI taxonomy Id: 936435
Other names: S. lacrymans var. lacrymans S7.3, Serpula lacrymans var. lacrymans S7.3
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