STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF38Bpre-mRNA-splicing factor 38B. (541 aa)    
Predicted Functional Partners:
ENSEEUP00000009948
annotation not available
 
      0.897
LUC7L3
Luc7-like protein 3 isoform X2.
   
 
 0.860
PNN
Pinin isoform X2.
   
    0.805
SRSF11
Serine/arginine-rich splicing factor 11 isoform X1.
   
 
 0.785
RBM25
RNA-binding protein 25.
   
  
 0.775
RBM39
RNA-binding protein 39 isoform X3.
   
    0.762
PRPF4B
Serine/threonine-protein kinase PRP4 homolog.
   
    0.592
SREK1
Splicing regulatory glutamine/lysine-rich protein 1 isoform X2.
   
   0.587
ENSEEUP00000002027
annotation not available
    
   0.519
ZFAND4
AN1-type zinc finger protein 4 isoform X1.
    
   0.519
Your Current Organism:
Erinaceus europaeus
NCBI taxonomy Id: 9365
Other names: E. europaeus, European hedgehog, common hedgehog, western European hedgehog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.