Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
L5KBR1_PTEAL | L5KDB0_PTEAL | L5KBR1 | L5KDB0 | DNA repair protein REV1. | Werner syndrome ATP-dependent helicase. | 0.633 |
L5KBR1_PTEAL | MAD2L2 | L5KBR1 | L5KGS5 | DNA repair protein REV1. | Mitotic spindle assembly checkpoint protein MAD2B. | 0.936 |
L5KBR1_PTEAL | PCNA | L5KBR1 | L5JZR7 | DNA repair protein REV1. | Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. | 0.899 |
L5KBR1_PTEAL | POLD1 | L5KBR1 | L5L641 | DNA repair protein REV1. | DNA polymerase. | 0.597 |
L5KBR1_PTEAL | POLD2 | L5KBR1 | L5KQ24 | DNA repair protein REV1. | DNA polymerase delta subunit 2. | 0.603 |
L5KBR1_PTEAL | POLK | L5KBR1 | L5KIG7 | DNA repair protein REV1. | DNA polymerase kappa. | 0.882 |
L5KBR1_PTEAL | RAD51 | L5KBR1 | L5K2H8 | DNA repair protein REV1. | DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] | 0.677 |
L5KBR1_PTEAL | REV3L | L5KBR1 | L5JMS6 | DNA repair protein REV1. | DNA polymerase zeta catalytic subunit. | 0.941 |
L5KDB0_PTEAL | L5KBR1_PTEAL | L5KDB0 | L5KBR1 | Werner syndrome ATP-dependent helicase. | DNA repair protein REV1. | 0.633 |
L5KDB0_PTEAL | L5KEQ2_PTEAL | L5KDB0 | L5KEQ2 | Werner syndrome ATP-dependent helicase. | DNA repair protein REV1. | 0.633 |
L5KDB0_PTEAL | PCNA | L5KDB0 | L5JZR7 | Werner syndrome ATP-dependent helicase. | Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. | 0.966 |
L5KDB0_PTEAL | POLD1 | L5KDB0 | L5L641 | Werner syndrome ATP-dependent helicase. | DNA polymerase. | 0.852 |
L5KDB0_PTEAL | POLD2 | L5KDB0 | L5KQ24 | Werner syndrome ATP-dependent helicase. | DNA polymerase delta subunit 2. | 0.756 |
L5KDB0_PTEAL | POLK | L5KDB0 | L5KIG7 | Werner syndrome ATP-dependent helicase. | DNA polymerase kappa. | 0.788 |
L5KDB0_PTEAL | RAD51 | L5KDB0 | L5K2H8 | Werner syndrome ATP-dependent helicase. | DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] | 0.949 |
L5KDB0_PTEAL | REV3L | L5KDB0 | L5JMS6 | Werner syndrome ATP-dependent helicase. | DNA polymerase zeta catalytic subunit. | 0.676 |
L5KDB0_PTEAL | TP53 | L5KDB0 | L5JZ91 | Werner syndrome ATP-dependent helicase. | Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family. | 0.813 |
L5KEQ2_PTEAL | L5KDB0_PTEAL | L5KEQ2 | L5KDB0 | DNA repair protein REV1. | Werner syndrome ATP-dependent helicase. | 0.633 |
L5KEQ2_PTEAL | MAD2L2 | L5KEQ2 | L5KGS5 | DNA repair protein REV1. | Mitotic spindle assembly checkpoint protein MAD2B. | 0.936 |
L5KEQ2_PTEAL | PCNA | L5KEQ2 | L5JZR7 | DNA repair protein REV1. | Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. | 0.899 |
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